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By Dr Pramod Kumar Pandey - August 15, 2025

Dr Pramod Kumar Pandey BSc (Hons), MSc, PhD, founder of PharmaGuru.co, is a highly experienced Analytical Research Expert with over 31 years in the pharmaceutical industry. He has played a key role in advancing innovation across leading Indian and global pharmaceutical companies. He can be reached at admin@pharmaguru.co

Learn how Ion Exchange Chromatography is used in pharmaceutical analysis for precise quantification of cations and anions in APIs. Includes principles, procedures, case studies, and regulatory insights.

Ion Exchange Chromatography (IEC): Quantification of Cations and Anions in APIs With 3+ FAQs

Ion Exchange Chromatography (IEC) is a separation technique that isolates molecules based on their net charge. It uses a charged stationary phase (ion exchange resin) to attract oppositely charged analytes. By adjusting buffer conditions such as pH and ionic strength, molecules are selectively bound and eluted, enabling effective separation and purification.

What is Ion Exchange Chromatography (IEC)?

Ion Exchange Chromatography is a form of liquid chromatography where separation of compounds occurs based on their net surface charge. It involves the reversible adsorption of charged analytes onto a charged stationary phase (ion exchanger) followed by elution using an appropriate mobile phase.

Separation Anions by Ion exchange chromatography
Separation Anions by Ion exchange chromatography

Principle

The core principle of IEC lies in the electrostatic interaction between charged solute molecules and oppositely charged functional groups on the stationary phase:

  • Cation Exchange Chromatography (CEX): Uses a negatively charged resin to attract and retain positively charged ions (cations).
  • Anion Exchange Chromatography (AEX): Uses a positively charged resin to bind negatively charged ions (anions).

The strength of interaction depends on:

  • The charge density of the analyte
  • Ionic strength and pH of the mobile phase
  • Temperature and flow rate

Elution is typically achieved by increasing the ionic strength or changing the pH of the mobile phase.

Mobile Phase Chemistry

The mobile phase in IEC plays a critical role in controlling separation. It typically consists of:

  • Buffer: Maintains pH, which directly affects analyte and resin charge.
  • Salt Gradient (e.g., NaCl, KCl): Competes with the analyte for binding sites, enabling elution.

Common Buffers:

  • Tris-HCl
  • Phosphate buffer
  • Acetate buffer
  • MES, HEPES for protein separations

pH selection is crucial because:

  • It determines the charge on the analyte.
  • It affects the ionisation of the stationary phase.

Column Chemistry

The column contains a polymeric or inorganic resin functionalized with ion-exchange groups:

  • Cation Exchangers:
    • Functional groups: Sulfonic acid (strong), carboxylic acid (weak)
    • Common resins: Sulfonated polystyrene
  • Anion Exchangers:
    • Functional groups: Quaternary ammonium (strong), diethylaminoethyl (DEAE, weak)
    • Common resins: Quaternary amine cellulose, DEAE cellulose

Resin selection is based on:

  • Strength of the ion-exchange group
  • Stability over a range of pH
  • Binding capacity and particle size

General Procedure

  1. Column Equilibration: Wash column with starting buffer to establish initial conditions.
  2. Sample Application: Introduce the sample onto the column; charged analytes bind to the resin.
  3. Wash: Remove unbound components with the starting buffer.
  4. Elution: Gradually increase salt concentration or change pH to elute bound analytes.
  5. Detection: Use UV detection, conductivity, or mass spectrometry for analysis.
  6. Regeneration: Clean column with high salt or pH solutions, then re-equilibrate.

Case Studies: Quantification of Cations and Anions in APIs Using Ion Exchange Chromatography

In the pharmaceutical industry, quantifying residual cations and anions in APIs is critical for ensuring product purity, safety, and compliance with ICH guidelines (e.g., Q3D for elemental impurities). Ion Exchange Chromatography provides a robust and highly sensitive method for this purpose. Below are real-world case studies illustrating the application of IEC in quantifying inorganic ions in APIs.

Case Study 1: Quantification of Residual Sodium and Chloride in an API (Sodium Salt Form)

Objective:
To quantify residual sodium (Na⁺) and chloride (Cl⁻) ions in a sodium salt of an API post-synthesis to ensure compliance with final specification limits.

Background:
During neutralisation and crystallisation processes, sodium hydroxide and hydrochloric acid were used. Traces of Na⁺ and Cl⁻ remained in the final drug substance.

Method:

  • Technique: Ion Chromatography using suppressed conductivity detection
  • Column: Dionex IonPac CS12A (for cations) and AS14A (for anions)
  • Mobile Phase:
    • Cation: Methanesulfonic acid (MSA), 20 mM
    • Anion: Sodium carbonate/sodium bicarbonate
  • Sample Preparation: API sample dissolved in deionized water and filtered
  • Detection: Suppressed conductivity detector

Results:

  • Sodium: 45 ppm (spec limit < 50 ppm)
  • Chloride: 18 ppm (spec limit < 25 ppm)
  • Recovery: 98–102%
  • RSD: <2% over six injections

Result Summary:
The method reliably quantified both ions below specification limits, ensuring process robustness and product quality.

Case Study 2: Determination of Lithium Content in a Lithium-Based API

Objective:
To determine the lithium ion (Li⁺) content in a lithium salt API to verify label claim and batch consistency.

Background:
Lithium carbonate and lithium citrate APIs are used in mood-stabilising drugs. Accurate quantification of lithium content is essential for dose control.

Method:

  • Column: Cation exchange column with sulfonated resin
  • Eluent: Dilute hydrochloric acid (4 mM)
  • Detector: Conductivity detection
  • Sample Prep: API sample dissolved in ultrapure water, filtered, and injected directly

Results:

  • Lithium content: 96.8% of theoretical content
  • Recovery: 101%
  • Linearity: r² = 0.9995 from 0.1 to 10 ppm
  • LOQ: 0.05 ppm

Result summary:
The method provided an accurate, sensitive, and reproducible measurement of lithium ion, suitable for release and stability testing.

Case Study 3: Impurity Profiling – Sulfate and Phosphate Ions in API Post-Purification

Objective:
To monitor sulfate (SO₄²⁻) and phosphate (PO₄³⁻) ions as process-related impurities after ion-exchange purification of a peptide-based API.

Background:
Sulfate and phosphate buffers were used during peptide synthesis and purification. Residual anions can affect product stability and patient safety.

Method:

  • Column: Anion exchange column (Dionex IonPac AS22)
  • Mobile Phase: 4.5 mM sodium carbonate / 1.4 mM sodium bicarbonate
  • Detection: Suppressed conductivity
  • Sample Prep: Lyophilised peptide API dissolved in water, filtered, and injected

Results:

  • Sulfate: 2.5 ppm (limit: 5 ppm)
  • Phosphate: Not detected (<0.2 ppm)
  • Recovery: 96–104%
  • Precision: <1.5% RSD

Conclusion:
The method demonstrated high specificity and sensitivity for residual anion quantification in biologic APIs.

Case Study 4: Quantification of Process Residuals in API from Ion Exchange Resin Use

Objective:
To detect leached ammonium (NH₄⁺) and nitrate (NO₃⁻) ions from ion exchange resins used in API polishing steps.

Background:
An ion exchange purification step using NH₄⁺-form resins was part of the process. Trace leaching needed quantification to meet ICH impurity guidelines.

Method:

  • Cation Column: Dionex IonPac CS17
  • Anion Column: Dionex IonPac AS19
  • Eluents:
    • Cation: 6 mM MSA
    • Anion: KOH gradient
  • Detection: Suppressed conductivity
  • Sample Prep: API dissolved in deionised water, filtered, and directly injected

Results:

  • Ammonium: 0.8 ppm (spec: NMT 1 ppm)
  • Nitrate: 0.3 ppm (spec: NMT 1 ppm)
  • Method validated per ICH Q2(R1)

Conclusion:
Ion chromatography enabled trace-level detection of resin-derived ions, demonstrating suitability for cleaning validation and release testing.

Summary Table

Case StudyAnalytesAPI TypeTechniqueLOD/LOQRegulatory Relevance
1Na⁺, Cl⁻Organic saltIEC + Suppressed Conductivity~0.1 ppmICH Q3D, USP <1225>
2Li⁺Lithium salt APICation IEC~0.05 ppmLabel claim, assay
3SO₄²⁻, PO₄³⁻Peptide APIAnion IEC<0.2 ppmStability, residual solvent
4NH₄⁺, NO₃⁻Small molecule APIDual-mode IEC~0.1 ppmProcess impurity control

Applications in Pharma

  • Protein and mAb purification
  • Enzyme purification and activity profiling
  • Nucleic acid isolation (e.g., plasmids, RNA)
  • Separation of charged drug substances and impurities
  • Ion analysis in formulations (e.g., Na+, Cl−)
  • Quality control and release testing

Precautions

  • Column Overloading: Avoid exceeding resin capacity to prevent poor resolution.
  • pH Sensitivity: Maintain optimal pH to preserve analyte and resin integrity.
  • Buffer Pre-filtration: Use 0.22 µm filtration to prevent column clogging.
  • Avoid Air Entry: Always keep resin hydrated to maintain performance.
  • Gradient Control: Use precise pump systems for reproducible gradient elution.

Troubleshooting

IssuePossible CauseSolution
Poor resolutionOverloaded column, incorrect pH or gradientOptimize loading and mobile phase
High backpressureBlocked frits or particulate matterClean or replace frit; filter buffers
No retention of analyteWrong ion exchange type or pH too high/lowVerify pI of analyte; adjust mobile phase
Broad or tailing peaksColumn degradation or dead volumeReplace resin; check tubing and connections
Irreproducible resultsInconsistent buffer preparationStandardize buffer preparation procedures

Conclusion

Ion Exchange Chromatography is a cornerstone technique in pharmaceutical and biochemical separations. Its robustness, scalability, and specificity make it an ideal choice for purifying charged biomolecules and active ingredients. With careful attention to column selection, mobile phase chemistry, and operating conditions, IEC can yield high-purity results critical for product development, quality control, and regulatory compliance.

You May Like

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  2. How To Control Impurities In Pharmaceuticals: Get Mastery In 11 Minutes
  3. How To Calculate Potency, Purity and Assay In Pharmaceuticals

FAQs

What is the principle of ion chromatography?

Ion Exchange Chromatography (IEC) is a separation technique that isolates molecules based on their net charge. It uses a charged stationary phase (ion exchange resin) to attract oppositely charged analytes. By adjusting buffer conditions such as pH and ionic strength, molecules are selectively bound and eluted, enabling effective separation and purification.

What is the process of ion exchange?

The process of ion exchange involves the reversible transfer of ions between a solution and a solid resin. The resin contains fixed charged groups that attract and exchange oppositely charged ions from the solution, allowing selective separation or removal of specific ions.

What are the advantages of ion exchange chromatography?

Advantages of Ion Exchange Chromatography (IEC):
1. High Selectivity: Separates molecules based on charge differences with excellent resolution.
2. Versatility: Suitable for proteins, peptides, nucleic acids, and small ions.
3. Scalability: Works from analytical to preparative and industrial scales.
4. High Capacity: Can bind large amounts of charged molecules.
5. Mild Conditions: Operates under aqueous, non-denaturing conditions—ideal for sensitive biomolecules.
6. Good Reproducibility: Consistent results with proper method control.
7. Compatible with Buffers: A Wide range of buffer systems can be used to optimise separation.

What are the 5 steps of ion exchange chromatography?

Five key steps of Ion Exchange Chromatography:
1. Equilibration: Prepare the column with buffer to establish the desired pH and ionic conditions.
2. Sample Loading: Introduce the sample; charged molecules bind to the resin.
3. Washing: Remove unbound or weakly bound substances with the starting buffer.
4. Elution: Change salt concentration or pH to release bound molecules.
5. Regeneration: Clean and re-equilibrate the column for reuse.

Further Reading

  1. USP <621> Chromatography

Source: United States Pharmacopoeia (USP) 43–NF 38, General Chapter <621>: Chromatography
Relevance:
This chapter outlines validated methodologies and system suitability for chromatography, including ion chromatography for pharmaceutical analysis. It supports method development, validation, and regulatory compliance for quantifying inorganic impurities like Na⁺, Cl⁻, SO₄²⁻, and others in drug substances and products.

2. ICH Q3D (R1): Guideline for Elemental Impurities

Source: International Council for Harmonisation (ICH), ICH Q3D(R1): Guideline for Elemental Impurities
Relevance:
While primarily focused on elemental impurities (including metal ions), this guideline supports the need for quantitative methods such as ion exchange chromatography for trace-level detection of residual ions originating from synthesis or formulation.

About Dr Pramod Kumar Pandey
Dr Pramod Kumar Pandey

Dr Pramod Kumar Pandey BSc (Hons), MSc, PhD, founder of PharmaGuru.co, is a highly experienced Analytical Research Expert with over 31 years in the pharmaceutical industry. He has played a key role in advancing innovation across leading Indian and global pharmaceutical companies. He can be reached at admin@pharmaguru.co

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