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By Dr Pramod Kumar Pandey - October 7, 2025

Dr Pramod Kumar Pandey BSc (Hons), MSc, PhD, founder of PharmaGuru.co, is a highly experienced Analytical Research Expert with over 31 years in the pharmaceutical industry. He has played a key role in advancing innovation across leading Indian and global pharmaceutical companies. He can be reached at admin@pharmaguru.co

pH plays a crucial role in the retention and separation of ionizable compounds in HPLC. By adjusting the mobile phase’s pH, analysts can control the ionisation state of analytes—whether acidic or basic—which directly influences their interaction with the stationary phase and ultimately their elution time. This allows precise control over the separation of compounds with […]

What Is Role of pH In HPLC Separation: Learn Easily In 7 Minutes

pH plays a crucial role in the retention and separation of ionizable compounds in HPLC. By adjusting the mobile phase’s pH, analysts can control the ionisation state of analytes—whether acidic or basic—which directly influences their interaction with the stationary phase and ultimately their elution time. This allows precise control over the separation of compounds with acidic or basic functional groups

High-Performance Liquid Chromatography (HPLC) is one of the most widely used techniques in analytical chemistry. It’s an indispensable tool for the separation, identification, and quantification of compounds in complex mixtures. The role of pH in HPLC analysis is crucial, influencing everything from the separation efficiency to the resolution and the behaviour of analytes.

In this blog, I will discuss why pH is so important in HPLC and how it impacts various aspects of the analysis.

What Is Role of pH In HPLC Separation

Major Takeaway: FAQs

Why is pH important in HPLC?

pH is important in HPLC because it affects the ionisation state of analytes, which influences their interaction with the stationary phase and their retention time. By controlling pH, analysts can optimise separation, resolution, and the stability of compounds, ensuring more accurate and reliable results

What is the pH range of HPLC columns?

The pH range of HPLC columns typically falls between 2 and 8 for silica-based columns. However, specialised columns, such as those made with polymeric materials, can withstand pH ranges from 1 to 12. It’s important to stay within the manufacturer-recommended pH range to avoid damaging the column and ensure optimal performance.

How does pH affect column chromatography?

pH affects column chromatography by influencing the ionization of analytes, which in turn alters their interaction with the stationary phase. Changes in pH can modify the polarity or charge of compounds, impacting their retention times, separation efficiency, and resolution. Extreme pH levels can also damage the column or affect the stability of the stationary phase.

pH

pH is a measure of the acidity or alkalinity of a solution, based on the concentration of hydrogen ions (H⁺). It is defined as the negative logarithm of the hydrogen ion concentration:

What Is Role of pH In HPLC Separation

A pH of 7 is neutral, values below 7 indicate acidity, and values above 7 indicate alkalinity.

The Role of pH in HPLC Separation

1. pH and the Interaction Between Analytes and the Stationary Phase

The stationary phase in HPLC is usually made of silica particles that are either unmodified or bonded with various chemical groups. The pH of the mobile phase influences the charge state of analytes and the surface charge of the stationary phase. Here’s how pH plays a role:

  • Ionisation of Analytes: Many compounds, especially acids and bases, ionise depending on the pH of the mobile phase. This ionisation affects their interaction with the stationary phase.
    • Acids: At lower pH, acids tend to remain in their protonated (neutral) form and may have less interaction with the stationary phase. At higher pH, they become deprotonated and acquire a negative charge, leading to stronger electrostatic interactions with positively charged stationary phases like cation exchange resins.
    • Bases: Similarly, at lower pH, bases are protonated and neutral, but at higher pH, they become deprotonated and negatively charged.
  • Ion-Exchange Interactions: The ionisation of analytes and the stationary phase can lead to ion-exchange mechanisms, which can either enhance or reduce the separation efficiency.

2. pH and Retention Time

Retention time is a critical factor in HPLC because it helps to identify and quantify compounds. pH influences retention time in several ways:

  • Alteration of Polarity: The ionisation state of a compound affects its polarity, which in turn affects how strongly it interacts with the stationary phase. The more ionised a compound is (especially in reversed-phase chromatography), the stronger its interaction with the stationary phase, potentially leading to increased retention time.
  • Buffering Capacity: A stable pH is essential for consistent retention times, especially when analysing compounds with pH-sensitive functional groups. If the pH fluctuates during the analysis, the ionization of compounds can change, leading to variability in retention times.

3. pH and Selectivity

The selectivity of a separation refers to the ability to distinguish between different analytes in a sample. pH is a key factor in achieving the desired selectivity:

  • Effect on Peak Shape and Resolution: When the pH of the mobile phase is optimized for a given analyte, it can lead to sharper peaks and better resolution between closely eluting compounds. On the other hand, if the pH is suboptimal, broad peaks and poor resolution may result.
  • Chromatographic Mode: pH plays a role in determining the chromatographic mode you are using, such as reversed-phase, normal-phase, or ion-exchange chromatography. Each mode has a different pH sensitivity and responds differently to changes in pH.

4. pH and Stability of Analytes

Many analytes are sensitive to changes in pH. In some cases, an analyte might degrade or undergo hydrolysis under certain pH conditions, which can compromise the integrity of the analysis. For example:

  • Acid or Base Hydrolysis: Some compounds, like esters or amides, can undergo hydrolysis under extreme pH conditions. Maintaining a proper pH range ensures that the analytes remain stable throughout the process.
  • Degradation Products: In some cases, a change in pH can lead to the formation of degradation products, which may interfere with the analysis or contribute to inaccurate quantification.

5. pH and Buffer Systems

To control the pH of the mobile phase in HPLC, buffer solutions are often used. Buffers are essential in maintaining a constant pH, especially during the elution of analytes. Some common buffers used in HPLC include:

  • Phosphate buffers
  • Acetate buffers
  • Tris buffers

Choosing the correct buffer is essential, as it should not only maintain a stable pH but also be compatible with the detection method (e.g., UV detection) and the nature of the analytes.

  • Buffer Capacity: The buffer’s ability to resist pH changes is also important. A buffer with a high capacity will ensure that the pH remains stable even when small amounts of acid or base are introduced during the separation process.

Common buffers and their pH range and LC-MS suitability

Buffer NamepKaEffective pH RangeVolatilityLC-MS CompatibilityNotes
Formic Acid3.752.8 – 4.2High✅ ExcellentEnhances ionization; ideal for ESI; commonly used in positive mode.
Acetic Acid4.763.8 – 5.8High✅ GoodMild ion suppression; widely used; better in low concentrations.
Ammonium Formate3.75 / 9.253.0 – 4.5, 8.2 – 10.2High✅ ExcellentVersatile; good for both positive and negative ion modes.
Ammonium Acetate4.8 / 9.254.0 – 5.8, 8.2 – 10.2High✅ ExcellentCommon in LC-MS for neutral to basic pH; MS-friendly.
Trifluoroacetic Acid (TFA)0.231.0 – 2.0High⚠️ LimitedStrong ion pairing; suppresses ESI signal; improves peak shape.
Phosphate Buffer2.1, 7.2, 12.31.5 – 3.0, 6.0 – 8.0Low❌ Not RecommendedNon-volatile; causes salt deposits; MS signal suppression.
Tris (Tris-HCl)8.17.0 – 9.0Low❌ Not RecommendedNon-volatile; interferes with ionization and contaminates MS.
HEPES7.56.8 – 8.2Low❌ Not RecommendedZwitterionic; not MS-compatible; forms adducts and suppresses signal.
MES6.15.5 – 6.7Low❌ Not RecommendedSulfonic group; non-volatile; interferes with MS analysis.
MOPS7.26.5 – 7.9Low❌ Not RecommendedSimilar to HEPES; non-volatile; not suitable for LC-MS.
Bicarbonate / CO₂6.36.0 – 6.8Moderate⚠️ ConditionalVolatile; usable with online pH control; unstable in open systems.

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Best Practices for pH in HPLC Analysis

To optimise HPLC results, consider the following best practices:

  1. Optimise pH for Maximum Separation: Ensure that the pH is optimised for each analyte in the mixture. It may require trial and error or literature research to find the optimal pH for your specific compounds.
  2. Stabilise pH: Always use buffers with a pH range that encompasses the pH of the mobile phase. This will ensure that the pH stays stable during the entire chromatographic process.
  3. Monitor pH Regularly: pH meters or pH test strips should be used to ensure the pH is consistent throughout the experiment. Regular calibration of pH meters is also necessary for accurate results.
  4. Consider pH’s Effect on Column Lifespan: Extreme pH conditions (either too acidic or too alkaline) can damage the stationary phase of the column over time. It’s important to maintain a pH range that is compatible with the column’s material to prolong its life.

Conclusion

The pH of the mobile phase is one of the most significant factors in High-Performance Liquid Chromatography. From influencing the retention time and selectivity of analytes to ensuring the stability of compounds, pH plays an essential role in obtaining reliable and reproducible results. A careful understanding and optimisation of pH can help analysts achieve high-quality separations, improve resolution, and avoid degradation of sensitive analytes.

Expert Tip

Next time you set up an HPLC analysis, don’t underestimate the power of pH—this seemingly small factor can dramatically influence your results, making all the difference in achieving optimal separation and accuracy

Related

  1. Learn HPLC Method Development With Expert Tips, 4 Case Studies and 7 FAQs
  2. Why is the Mobile phase filtered in HPLC: Expert Tips
  3. HPLC Troubleshooting: 5+ Common Problems and Their Solutions

Further reading

  1. LIQUID CHROMATOGRAPHY– MASS SPECTROMETRY: Robert E. Ardrey
  2. HPLC METHODS FORRECENTLY APPROVED PHARMACEUTICALS: George Lunn
  3.  HPLC FOR PHARMACEUTICAL SCIENTISTS: YURI KAZAKEVICH | ROSARIO LOBRUTTO
  4. Advances in Chromatography: Nelu Grinberg and Peter W. Carry
  5. Handbook of ANALYTICAL VALIDATION: Michael E. Swartz Ira S. Krull
  6. pH
About Dr Pramod Kumar Pandey
Dr Pramod Kumar Pandey

Dr Pramod Kumar Pandey BSc (Hons), MSc, PhD, founder of PharmaGuru.co, is a highly experienced Analytical Research Expert with over 31 years in the pharmaceutical industry. He has played a key role in advancing innovation across leading Indian and global pharmaceutical companies. He can be reached at admin@pharmaguru.co

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